Differences

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--- ugli [2025/12/19 15:14] – sylvia
+++ ugli [2025/12/19 15:17] (current) – sylvia
@@ Line 53: / Line 53: @@
 As of March 2023, data of an additional 28,149 genotyped participants has been made available. Samples in this release, called UGLI2, were genotyped using the FinnGen Thermo Fisher Axiom® custom array.
-,366 participants were selected for UGLI 2 release and assessed using the pre mentioned array. All genotypes were included for QC screening, but the QC focussed on the the autosomes and chromosomes X for which there are N=617,715 and 22,346 markers available, respectively. A final set of 28,149 samples and 441,596 markers on autosomal and 18,450 X chromosomes markers passed the QC steps described in
+,366 participants were selected for UGLI 2 release and assessed using the pre mentioned array. All genotypes were included for QC screening, but the QC focussed on the the autosomes and chromosomes X for which there are N=617,715 and 22,346 markers available, respectively. A final set of 28,149 samples and 441,596 markers on autosomal and 18,450 X chromosomes markers passed the QC steps described in the quality check rapport.
-{{ :qc_report_ugli2_release_1_-v1.pdf |}}.
 ^ UGLI2 - Affymetrix cohort - samples that passed QC           ||
@@ Line 84: / Line 83: @@
 As of december 2025, data of 60,157 genotyped participants has been made available. Samples in this release, called UGLI2+3, were genotyped using the FinnGen Thermo Fisher Axiom® custom array. The sample includes the previously genotyped participants from UGLI2 (see above). The QC and imputation was done on the combined dataset of UGLI2 and UGLI3.
-,553 participants were selected for UGLI 2+3 release and assessed using the pre mentioned array. All genotypes were included for QC screening, but the QC focussed on the the autosomes and chromosomes X for which there are N=615,682 and 22,346 markers available, respectively. A final set of 60,157 samples and 476,693 markers on autosomal and X chromosomes passed the QC steps described in {{ ::qcreport_ugli2and3_oct2025.pdf |}}.
+,553 participants were selected for UGLI 2+3 release and assessed using the pre mentioned array. All genotypes were included for QC screening, but the QC focussed on the the autosomes and chromosomes X for which there are N=615,682 and 22,346 markers available, respectively. A final set of 60,157 samples and 476,693 markers on autosomal and X chromosomes passed the QC steps described in the quality check rapport.
 ^ UGLI2+3 - Affymetrix cohort - samples that passed QC           ||
@@ Line 99: / Line 98: @@
 ==== Quality Checks ====
-An UGLI2 - Affymetrix (release 2.0) Quality Control Report is available, describing in detail the QC steps that were taken during the quality control (QC) process of the second release of UGLI comprising the genotype of 29,366 participants assessed using the FinnGen Thermo Fisher Axiom® custom array. {{ :qc_report_ugli2_release_1_-v1.pdf |}}
+An UGLI2+3 - Affymetrix (release 3.0) Quality Control Report is available, describing in detail the QC steps that were taken during the quality control (QC) process of the third release of UGLI comprising the genotype of 60,157 participants assessed using the FinnGen Thermo Fisher Axiom® custom array. {{ ::qcreport_ugli2and3_oct2025.pdf |}}
 ====Imputation====