Lifelines Wiki

User Tools

Site Tools

Trace: • ugli
ugli

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
ugli [2026/04/07 14:32] – [Overlap between studies] sylviaugli [2026/06/04 09:33] (current) – [Imputation] sylvia
Line 40: Line 40:
 chromosomes passing all QC steps described in {{ :qc_report_ugli1_release_2_-v1.pdf |}} were used for genetic imputation. Genetic imputation was done through the Sanger imputation service chromosomes passing all QC steps described in {{ :qc_report_ugli1_release_2_-v1.pdf |}} were used for genetic imputation. Genetic imputation was done through the Sanger imputation service
 using the Haplotype Reference Consortium using the Haplotype Reference Consortium
-( [[http://www.haplotype-reference-consortium.org]] ) panel. The dataset was formatted+( [[https://www.sanger.ac.uk/collaboration/haplotype-reference-consortium/]] ) panel. The dataset was formatted
 following the instructions from the Sanger webpage following the instructions from the Sanger webpage
 ( [[https://www.sanger.ac.uk/science/tools/sanger-imputation-service]] ).\\ ( [[https://www.sanger.ac.uk/science/tools/sanger-imputation-service]] ).\\
Line 80: Line 80:
  
 ====Imputation==== ====Imputation====
-A final set of 28,149 samples and 460,136 markers on autosomal and X chromosomes passing all QC steps described above were used for genetic imputation. Genetic imputation was done through the Sanger imputation service using the Haplotype Reference Consortium (http://www.haplotype-reference-consortium.org) panel.+A final set of 28,149 samples and 460,136 markers on autosomal and X chromosomes passing all QC steps described above were used for genetic imputation. Genetic imputation was done through the Sanger imputation service using the Haplotype Reference Consortium (https://www.sanger.ac.uk/collaboration/haplotype-reference-consortium/) panel.
  
 ====SNP array intensity files==== ====SNP array intensity files====
Line 111: Line 111:
 ====Imputation==== ====Imputation====
 A final set of 60,157 samples and 476,693 markers on autosomal and X chromosomes passing all QC steps described in the QC rapport and were used for genetic phasing and imputation. Genetic imputation was done through the  A final set of 60,157 samples and 476,693 markers on autosomal and X chromosomes passing all QC steps described in the QC rapport and were used for genetic phasing and imputation. Genetic imputation was done through the 
-Sanger imputation service using the Haplotype Reference Consortium (http://www.haplotype-reference-consortium.org) panel. +Sanger imputation service using the Haplotype Reference Consortium (https://www.sanger.ac.uk/collaboration/haplotype-reference-consortium/) panel. 
 Method: See QC report Method: See QC report
  
ugli.1775572347.txt.gz · Last modified: by sylvia